To
understand genetics we have to review some basic concepts, the history
of their development and a glossary of terms:
Genetics: Studies the human
characteristics inherited from our parents.
DNA: Desoxyribonucleic acid
is a compound formed by a double chain of four amino acids, also
called bases. The chains are helicoidal in shape thus their definition
as a double helix with bridges among their elements. The four amino
acids are Adenine, Guanine, Cytosine and Thymine.
Each chromosome is a single long DNA molecule composed by these
bases. There are three billion bases in a human being. The year
2003 celebrated the 50th anniversary of the DNA discovery by Watson
and Crick in England, February of 1953, based on the pioneering
work of Rosalind Franklin. This feat has been considered to be the
opening of the secret of life and it is a landmark in the history
of medicine.
This
structure was proposed by James Watson and Francis Crick
RNA: Ribonucleic acid is found in the nucleus as
well as the cytoplasm of cells and has a similar structure of DNA.
It is indispensable to carry orders from the DNA. A new micro-RNA
just discovered about 10 years ago plays a major role in the development
and growth of all tissues; it may even act as a silencer or pre-programmed
element for the destruction of certain cells at a certain time.
These elements are known as "ribo-switches". There are several kinds of RNA: Messenger RNA, which replicates
genes, Transfer RNA, Ribosomal RNA which travels to protein- making
factories as ribosomal RNA. The sugar desoxyribose and phosphate,
not to be confused with RNA make up the backbone of the helix with
two strands of bases or nucleotides facing each other.
Chromosomes are packets
of genes in the nucleus of cells. The human being has 23 pairs,
total 46. One chromosome comes from the mother and another one from
the father to make the pair, or diploid .Two of the 46 chromosomes
are sex chromosomes called X and Y. Females have two X chromosomes
while males have one X and one Y chromosome.
Genes are contained in chromosomes
and carry the information for making all the proteins required by
all living organisms. They are about 20,000 genes responsible for
a human being. They determined characteristics such as eye color
and hair, height as well as some disorders passed from parents to
children.
Genome is the entire content
of DNA in the body including all of its genes. The Human Genome
Project begun in 1990 and by June of 2000, 85 % of its elements
(DNA) have been drafted or roughly identified.
Genotype and Phenotype:
Genotype refers to the genetic constitution of an organism (the
blue print), to be distinguished from its physical appearance or
phenotype, the individual itself.
Genomic is the study of
how genes interact and determine the characteristics of living things.
Mutations are changes in DNA due to chromosomal defects transmitted
from parents to their children or slow “changes” induced
by environmental forces.
Genetic Disorders occur
when DNA mutations or chromosomal defects are passed to the offspring.
If only one pair of genes is affected, it causes a uni-factorial
disease such as sickle cell anemia and cystic fibrosis. If many
different genes are involved, combined with environmental factors,
they cause multi-factorial diseases such as asthma, diabetes and
cardiovascular disease.
To summarize and better illustrate the concepts
mentioned above, consider the genome as a book with 23 chapters
made up by the chromosomes. These are in pairs or diploids, each
half is a haploid. There are 23 diploids and 46 haploids. Each chapter
has thousands of stories or genes totaling up to 30,000 in the human
being. Each story or gene has thousands of paragraphs called exons.
Each paragraph has many words or codons. Each codon has a number
of letters called bases. So far the total number of bases has been
calculated to be 3 billion, but only 3% form genes. Four bases:
Adenine, Guanine, Cytosine and Thymine form a DNA molecule, chemically
known as a nucleotide.
“Over 80% of all deaths are caused
by 20 diseases, associated with no more than 200 or 300 genes, all
of which are about to be identified in the very near future.”
(Dr. Robert Roberts, Molecular Cardiology September 2000)
Genetic
Testing:
What is gene testing? How does it
work?
Gene tests, also called DNA-based tests are the newest and most
sophisticated of the techniques used to test for genetic disorders.
They involve direct examination of the DNA molecule itself. Other
genetic tests include biochemical tests for enzymes and other proteins
and for microscopic examination of stained or fluorescent chromosomes.
Genetic tests are used for the following:
- Carrier screening involves identifying
unaffected individuals who carry one copy of a gene for a disease
that requires two copies for
the disease to be expressed.
- Pre-implantation genetic diagnosis
- Prenatal diagnostic testing.
- Newborn screening.
- Pre-symptomatic testing for predicting
adult-onset disorders such as Huntington's disease.
- Pre-symptomatic testing for estimating
the risk of developing adult-onset cancers and Alzheimer's disease.
- Confirmation diagnosis of a symptomatic
individual
- Forensic/identity testing.
Screening
Embryos for Disease:
Pre-implantation genetic diagnosis (PGD)
is a test that screens for genetic flaws among embryos used for
in-vitro fertilization. With PGD testing DNA samples from embryos
created in-vitro by the combination of a mother's egg and a father's
sperm are analyzed for gene abnormalities that can cause disorders.
Fertility specialists can use the results of this analysis to select
only mutation-free embryos for implantation into the mother's uterus.
Before PGD, couples at higher risks for conceiving
a child with a particular disorder would have to initiate the pregnancy
and then undergo chorionic villous sampling in the first trimester
or amniocentesis in the second trimester to test the fetus for the
presence of disease. If the fetus tested positive for the disorder,
the couple would be faced with the dilemma of whether or not to
terminate the pregnancy. With PGD, couples are much more likely
to have healthy babies, Although PGD has been practiced for years,
only a few specialized centers worldwide offer this procedure.
In gene tests, scientists scan a patient's
DNA sample for mutated sequences. A DNA sample can be obtained from
any tissue, including blood. For some types of gene tests, researchers
design short pieces of DNA called probes, whose sequences are complementary
to the mutated sequences. These probes will seek their complement
among the three billion base pairs of an individual's genome. If
the mutated sequence is present in the patient's genome, the probe
will bind to it and flag the mutation. Another type of DNA testing
involves comparing the sequence of DNA bases in a patient's gene
to a normal version of the gene. Cost of testing can range from
hundreds to thousands of dollars, depending on the sizes of the
genes and the numbers of mutations tested.
What
are some of the pros and cons of gene testing?
Gene testing already has dramatically improved
lives. Some tests are used to clarify a diagnosis and direct a physician
toward appropriate treatments, while others allow families to avoid
having children with devastating diseases or identify people at
high risk for conditions that may be preventable. Aggressive monitoring
for and removal of colon growths in those inheriting a gene for
familial adenomatous polyposis, for example, has saved many lives.
On the horizon is a gene test that will provide doctors with a simple
diagnostic test for a common iron-storage disease, transforming
it from a usually fatal condition to a treatable one.
Commercialized gene tests for adult-onset
disorders such as Alzheimer's disease and some cancers are the subject
of most of the debate over gene testing. These tests are targeted
to healthy pre-symptomatic people who are identified as being at
high risk because of a strong family medical history for the disorder.
The tests give only a probability for developing the disorder. One
of the most serious limitations of these susceptibility tests is
the difficulty in interpreting a positive result because some people
who carry a disease-associated mutation never develop the disease.
Scientists believe that these mutations may work together with other,
unknown mutations or with environmental factors to cause disease.
A limitation of all medical testing is the
possibility for laboratory errors. These might be due to sample
misidentification, contamination of the chemicals used for testing,
or other factors.
Many in the medical establishment feel that
uncertainties surrounding test interpretation, the current lack
of available medical options for these diseases, the tests' potential
for provoking anxiety, and risks for discrimination and social stigmatization
could outweigh the benefits of testing.
For
what diseases are gene tests available?
Currently, more than 900 genetic tests are
available from testing laboratories. Some gene tests available in
the past few years from clinical genetics laboratories appear below.
Test names and a description of the diseases or symptoms are in
parentheses. Susceptibility tests, noted by an asterisk, provide
only an estimated risk for developing the disorder. Contact Gene
Tests for comprehensive information on test
availability and genetic testing facilities.
Currently
Available DNA-Based Gene Tests:
- Alpha-1-antitrypsin deficiency (AAT; emphysema and liver disease)
- Amyotrophic lateral sclerosis (ALS; Lou Gehrig's Disease; progressive
motor function loss leading to paralysis
and death)
- Alzheimer's disease* (APOE; late-onset variety of senile dementia)
- Ataxia telangiectasia (AT; progressive brain disorder resulting
in loss of muscle control and cancers)
- Gaucher disease (GD; enlarged liver and spleen, bone degeneration)
- Inherited breast and ovarian cancer* (BRCA 1 and 2; early-onset
tumors of breasts and ovaries)
- Hereditary nonpolyposis colon cancer* (CA; early-onset tumors
of colon and sometimes other organs)
- Charcot-Marie-Tooth (CMT; loss of feeling in ends of limbs)
- Congenital adrenal hyperplasia (CAH; hormone deficiency; ambiguous
genitalia and male pseudohermaphroditism) (means false bi-sexual)
- Cystic fibrosis (CF; disease of lung and pancreas resulting
in thick mucous accumulations and chronic infections)
- Duchenne muscular dystrophy/Becker muscular dystrophy (DMD;
severe to mild muscle wasting, deterioration, weakness)
- Dystonia (DYT; muscle rigidity, repetitive twisting movements)
- Fanconi anemia, group C (FA; anemia, leukemia, skeletal deformities)
- Factor V-Leiden (FVL; blood-clotting disorder)
- Fragile X syndrome (FRAX; leading cause of inherited mental
retardation)
- Hemophilia A and B (HEMA and HEMB; bleeding disorders)
- Hereditary Hemochromatosis (HFE; excess iron storage disorder)
- Huntington's disease (HD; usually midlife onset; progressive,
lethal, degenerative neurological disease)
- Myotonic dystrophy (MD; progressive muscle weakness; most common
form of adult muscular dystrophy)
- Phenylketonuria (PKU; progressive mental retardation due to
missing enzyme; correctable by diet)
- Adult Polycystic Kidney Disease (APKD; kidney failure and liver
disease)
- Prader Willi/Angelman syndromes (PW/A; decreased motor skills,
cognitive impairment, early death)
- Sickle cell disease (SS; blood cell disorder; chronic pain
and infections)
- Spinocerebellar ataxia, type 1 (SCA1; involuntary muscle movements,
reflex disorders, explosive speech)
- Spinal muscular atrophy (SMA; severe, usually lethal progressive
muscle-wasting disorder in children)
- Thalassemias (THAL; anemias - reduced red blood cell levels)
- Tay-Sachs Disease (TS; fatal neurological disease of early
childhood; seizures, paralysis) [3/99]
Is
genetic testing regulated?
Currently in the United States, no regulations
are in place for evaluating the accuracy and reliability of genetic
testing. Most genetic tests developed by laboratories are categorized
as services, which the Food and Drug Administration (FDA) does not
regulate. Only a few states have established some regulatory guidelines.
This lack of government oversight is particularly troublesome in
light of the fact that a handful of companies have started marketing
test kits directly to the public. Some of these companies make dubious
claims about how the kits not only test for disease but also serve
as tools for customizing medicine, vitamins, and foods to each individual's
genetic makeup. Another fear is that individuals who purchase such
kits will not seek out genetic counseling to help them interpret
results and make the best possible decisions regarding their personal
welfare. More information on these questionable test kits is available
from Dubious
Genetic Testing, an online report provided by
Quackwatch. For
a brief overview of the current regulatory environment for genetic
testing, see the Oversight
of Genetic Testing, a Genetics Brief from the
National Conference of State Legislatures.
Does
insurance cover genetic testing?
In most cases, an individual will have to
contact his or her insurance provider to see if genetic tests, which
cost between $200 and $3000, are covered. Usually insurance companies
do not cover genetic tests, those that do will have access to the
results. Insured persons would need to decide whether they would
want the insurance company to have this information. States have
a patchwork of genetic-information nondiscrimination laws, none
of them comprehensive. Existing state laws differ in coverage, protections
afforded, and enforcement schemes. The National Conference of State
Legislatures provides a listing
of current legislation regarding genetic information and health
insurance. The recent marketing of genetic test kits directly to
consumers, may lead to an increase in demand for insurance coverage.
See the Genetics
and Health Insurance (PDF) policy brief from
the National Conference of State Legislatures for more information.
Testing
Recommendations:
Secretary's
Advisory Committee on Genetic Testing - Access
documents about oversight of genetic testing, genetic discrimination
legislation, gene patenting and searching, and secondary subjects.
Promoting
Safe and Effective Genetic Testing in the United States
- Final report of the Task Force on Genetic Testing created by the
National Institutes of Health-Department of Energy Working Group
on Ethical, Legal, and Social Implications of Human Genome Research.
Published September 1997
How will the knowledge of Genetics
influence medicine and specifically the management of cardiovascular
disease?
Remember: ALL
DISEASES HAVE A GENETIC COMPONENT, WHETHER INHERITED OR RESULTING
FROM THE BODY’S RESPONSE TO ENVIRONMENTAL STRESSES.
Genetics
offers the following contributions to medicine:
Predictability: By having
a genetic profile, individuals will be able to know their propensity
to develop certain disorders before symptoms appear. Examples: many
forms of cancer, premature heart attacks and strokes, arterial hypertension,
diabetes. Recently a study in Vernata, Italy by Dr. Franco Romeo,
identified a mutation of gene LOX-1 which promotes oxidized lipids
(LDL) to accumulate in the lining of the coronary arteries leading
to heart attacks.
Determining carrier status: Important
for prospective parents before having offspring. The parents may
be free of overt illness themselves but may be carriers. When both
parents are carriers, all of their offspring will be affected by
a genetic disorder.
Diagnosis: Diagnosing illnesses
affecting families secondary to gene mutations, before the illness
presents its full manifestations is clearly important. In newborns
or even in the prenatal state by amniocentesis the diagnosis of
certain conditions can accurately be made, for instance, phenylketonuria,
cystic fibrosis, sickle cell anemia.
Individual Identification (ID): Establishes
true identity in questionable fatherhood, or for forensic purposes.
It will replace regular finger printing.
Gene manipulation and therapy:
It can be done by transplanting defective genes with healthy genes,
by modifying or administering genes that are lacking in certain
conditions, and by removing certain genes that caused abnormalities
or unwanted characteristics.
Pharmacogenomics, molecular medicine
and proteinomics: The Genome Human Project has opened enormous
possibilities for the treatment of diseases. Miracle drugs or “designer
drugs” are in the making. With the aid of ultra-fast computer-driven
devices, droplets of genetic material are sampled and analyzed for
a specific code. Dr. Francis Collins, Director of the Human Genome
Research Institute of NIH (National Institute of Health) stated
”If you understand the genetic basis of a disease, then you
can predict what protein it produces and set about developing a
drug to block it”.
Traditionally, physicians prescribe drugs
treating diseases at the last phase of a very complex chain of biochemical
events. In the near future, individual patients will be given medications
designed specifically for them according to their pertinent code
at their onset of their disease. Medications will be more effective;
their dosage will be precisely prescribed. At the end, medical care
will be more efficient and less expensive. Redundancy of multiple
agents and their over-dosage will be avoided. The traditional “trial-and-error”
method in the use of therapies will not longer occur. Side effects
and allergic reactions will be precisely predicted in patients.
Another development will be the precise
targeting of affected organs and tissues for the most beneficial
effect of medications. Proteinomics will determine the effective
vectoring or transporting of drugs by using certain proteins and
modified viruses sent to the intended targets in precise doses.
At present, some drugs have to be administered in larger doses systemically
in order to obtain high enough blood levels in the organs and
tissues being treated. With the new advances in proteinomics the
cost-effectiveness of medical therapy will be very beneficial.
Stem cell therapy and cloning:
Stem cells are primitive cells capable of regenerating tissues or
organs when placed in areas of need. Stem cells are normally present
in the human body, regardless of its age, usually in the bone marrow,
peritoneum (membranes inside of the abdomen) and even in the brain.
Injection of these cells in the heart muscle of patients suffering
heart attacks has shown spectacular repairs. Dr. Perin, from the
Texas Heart Institute reported great results in 21 patients suffering
from congestive heart failure secondary to coronary disease. He
injected multiple sites of the heart muscle with stem cells in the
most affected areas (Reported in Circulation, April 2003).
Cloning of human beings for the purpose of
obtaining a bank of stem cells is being done, regardless of the
ethical controversy. When the political and religious issues are
settled, this method, properly legislated, will provide stem cells
in amounts required by certain diseases, changing their otherwise
tragic outcome. This is the case in spinal injuries, ALS (Amyotrophic
lateral sclerosis) myocardiopathies (diseases of the heart muscle)
and even strokes and other forms of brain damage.
The following websites were used regarding
genetics and related illnesses.
Center for Disease Control and Prevention 800-311-3435 http://www.cdc.gov/genomics/info.htm and
www.ornl.gov/hgmis
For
more information:
Genes,
Dreams, and Reality: The Promises and Risks of the New Genetics
- Article from Judicature.
What
Can the New Gene Tests Tell Us? - Article from
the Judges' Journal of the American Bar Association.
Bridging
the Gap Between Life Insurer and Consumer in the Genetic Testing
Era - Article from the Indiana Law Journal.
Updated 18th 2007